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Sunday, April 20th, 2008 11:44 am
Seriously. Stick with me here; glycolysis is cool.

In a ten-step process, our cells break up a glucose -- one of the simplest sugars, a six-carbon ring -- into two three-carbon strings ("pyruvate") to feed to our mitochondria. From this we get some energy, plus the promise of a big pile more once the mitochondria get going.

The first step of this process is to dump a phosphate group onto the glucose. This achieves three things: 1) put the molecule in a higher-energy state so the rest of the reaction will want to run downhill, 2) trap the glucose where it is because apparently phosphorylated glucose can't get through cell membranes any more, 3) suck more glucose in to the cell from the bloodstream, because hey wow, now there's a concentration gradient of glucose, because the phosphorylated stuff in here doesn't count any more, so new stuff flows in to balance the concentrations again.

I think that's elegant to begin with. All three things get done with one operation. Power up, grab the stuff you need, and make sure more stuff you need is coming. But the thing that makes my inner engineer go "yay!" is this:

Glycolysis, like many chemical processes in our cells, is inhibited by the presence of enough of its end products. Reactions don't run away forever. In this case, it's that very first step that gets inhibited. We don't phosphorylate -- and trap, and collect more of -- the sugar if we can't finish the process of using it. We don't waste the energy on it and we don't bogart the glucose fuel.

Speaking of not wasting, lactate is just as cool. Our bodies have thought of stuff, man. They've got it handled.

(But I still want a word with the designer on the subject of knees.)
Monday, April 21st, 2008 02:03 am (UTC)
You know, the sheer elegance still leaves me somewhat conflicted. I don't believe in ID as a euphemism for Judeo-Christian creation, but sometimes I still wonder exactly how likely it is that this progression could occur out of chance and circumstance, even over billions of years.
Monday, April 21st, 2008 03:00 am (UTC)
Me too. Have you seen The Evolution of Clocks (youtube)? That guy's got an ax to grind, which is slightly annoying, but the video does briefly address some nonintuitive things, such as how quickly a new form can dominate and why we may not see transitions in a fossil record.
Monday, April 21st, 2008 03:23 am (UTC)
I haven't encountered it, no. I'm just now starting to watch it, and I think I do hang up on the "abiogenesis" question, as he stresses. Where did those magical self-organizing gears come from?

I'll have to finish it out, though, and see what I think of the rest.

For the record, I do believe in evolution. I just know that A) Occam's razor is a tool for determining relative likelihoods, not a universal truth; B) Occam's razor (and similar reasoning devices) rely on you being able to define what is evidence of another entity and what isn't, and is thus weak-to-useless in trying to prove or disprove the actual -existence- of another entity; C) Just because evolution exists does not in any way preclude starting from a relatively advanced or pre-engineered seed state.

OTOH, on some days I also like the quantum many-worlds theory. If it's true, than if life could exist, it does, somewhich. In that case, all this miraculous configuration isn't evidence of anything but the wonderful power of permutations across near-infinitely complex variables.

Of course, -then- I get into the question of if we're all just a big nested switch/case statement, what's the interpreter?
Monday, April 21st, 2008 04:20 pm (UTC)
...I think I do hang up on the "abiogenesis" question, as he stresses. Where did those magical self-organizing gears come from?

Yes. Even imagining that it took millions (billions?) of years, it's still hard for me to fathom.

It's true that people have done experiments replicating the conditions we believe to have been around on primeval Earth, dumping a bunch of elements into a soup and shaking it, and yes, they DO get what we would say are organic compounds, the building blocks of life. But they've never gotten life.

I too believe in evolution, but I suspect I have some of the same "hey waitaminit" reactions you have. We presume life comes only from life, and I sure don't know how to make it come from anything else, but that raises a pretty big question.

Fortunately, I also believe it is good science to question and investigate things that don't seem to make obvious sense. :)